PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029356-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 425aa    MW: 46213.3 Da    PI: 8.3437
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029356-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35251172103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll
  PSME_00029356-RA  25 FLTKTYQLVDDPATNHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKMVPDR---------WEFANEFFRKGEKHLL 108
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k++
  PSME_00029356-RA 109 CEIHRRKTS 117
                       ******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.01E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MALILDSCEG MLLSVESHKS VPAPFLTKTY QLVDDPATNH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKMVP DRWEFANEFF RKGEKHLLCE IHRRKTSSQA  120
VQYSTSGHGM PMSSSNISPT TSDDQDWSPL SIPLSSPRGV ATAAGGGGGS LMVGCSRGGP  180
AAVLHTSATA AAAAVSALSD DNERLRRNNS MLLSELTHMQ KIYNDIIFFV QHHVRIPPSL  240
PHQAGGASSS SAMNMNMNMN RVTYHQQYST ANPNAVPILL EAPTVVPSTP GIADAKDQRI  300
CMNPNNRKVV EISSSSAQIS QLFGLVAGTA RASFVDTKLK EMAAASSSPS TSSVTVADQV  360
EGIKSPPKLF GVPLHGRKRL HPQWPDIVEQ AEPNSLQVDQ YRNITVAPFK ALKTDLALNL  420
GPSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hkt_A3e-21211144106HEAT-SHOCK TRANSCRIPTION FACTOR
1hks_A3e-21211144106HEAT-SHOCK TRANSCRIPTION FACTOR
2ldu_A3e-212011716123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112180.11e-112Heat stress transcription factor B-4
SwissprotQ9C6351e-87HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLW9SA361e-112W9SA36_9R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-81heat shock transcription factor B4